PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo4G0062100
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 525aa    MW: 54796.6 Da    PI: 6.3052
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo4G0062100genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.39.9e-12337379754
                     HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++ErrRR+++N+++  Lr+++Pk      +K++ a+iL  A+eY+k+L
  Spipo4G0062100 337 MAERRRRKKLNDRLYMLRSVVPKI-----TKMDRASILGDAIEYLKEL 379
                     79*********************7.....7****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.599330379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-16333395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-14336385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-9336379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-15337392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.22E-12337383No hitNo description
CDDcd048731.55E-7453517No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010440Biological Processstomatal lineage progression
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MVMGDGKDEL GLASFKSMLE DDWYLAATAG TSGHGDGGGH PSAHEGGGFE SLHGHHIRHH  60
QQEINPSAAE AMLLQPVDSS SSCSPSSVFN LDPSQPFFPQ KSALSSLLNV VCSNPFDAVS  120
FDLSCDTSGF LANSPMLMNR GGGAAGVGGG GGAGVGGGGS GMLGFGGLGP CGPMVTSDLI  180
PVPDNGGGAG YNAAVGLEVF ESSPFLNRPK VIRPLEIFPP VGAQPTLFQK RAAALRQNSG  240
RNLGCLDSAA AASHGSASAK EEHEKRKRVE EEDDMDEASI DGSGLNYDSD DVTGDNLKMD  300
GSTKAGGGGS GSNANSTVTG GGDHKGKKKG LPAKNLMAER RRRKKLNDRL YMLRSVVPKI  360
TKMDRASILG DAIEYLKELL QRINDLHSEL ESTPSGSSLP GSAATPSFHP LTPTPPTLPC  420
RVKEELLSSS LPSPNSQLPR VEVREREGRA VNIHMFCSRR PGLLLSTMRA LDSLGLDIQQ  480
AVISCFNGFA LDVFRAEQCK EGPGVRAEEI KAVLLHSAAC HGSM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1326344KKKGLPAKNLMAERRRRKK
2338345ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010249206.10.0PREDICTED: transcription factor ICE1-like
SwissprotQ9LSE21e-124ICE1_ARATH; Transcription factor ICE1
TrEMBLA0A075F5271e-176A0A075F527_9ASPA; Inducer of CBF expression 1
STRINGVIT_14s0068g01200.t011e-158(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP164637101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.48e-86bHLH family protein